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Software

Software tools developed at the Institute of Functional Genomics


Software from the Spang Group

compdiagTools - a toolbox for microarray analysis

DCOEX - finding groups of differentially coexpressed genes

DOCVAL - Documentation by value

Guided Clustering - Combined analysis of a microarray and experimental data

JALI - Jumping Alignments

nem - Nested Effects Models

transApproxs - Transitive Approximations

TWILIGHT - Estimating the false discovery rate


Please note:

more detailed information about each tool are in preparation...

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Software from the Oefner Group

ReseqChip - automates the process of resequencing using multiple local context probe

INCA - peak alignment tool, allows for a widely automated preprocessing of GCxGC-TOF-MS data


Please note:

more detailed information about each tool are in preparation...

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Software from the Lottaz Group

adSplit - find annotation-driven splits

OrderedList - Similarities of ordered gene lists

SHARCGS - Short-read assembler based on robust contig extension for genomic sequencing

StAM - Structured Analysis of Microarrays


Please note:

more detailed information about each tool are in preparation...

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Software from the Gronwald Group

R-script for Data Normalization of 1H-NMR Metabolite Fingerprinting Datasets (Hochrein et al, 2015)

MetaboQuant - Computational Analysis of Protein-Protein Complexes


Please note:

more detailed information about each tool are in preparation...

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Software from the Engelmann Group

miRA - adaptable novel miRNA identification in plants using small RNA sequencing data [paper] [source]

aIDA - A statistical approach to virtual cellular experiments; improved causal discovery using accumulation IDA (aIDA)? [paper] [source]


Please note:

more detailed information about each tool are in preparation...


Packages, we host for friends

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  1. Department of Medicine
  2. Institute of Functional Genomics

Statistical Bioinformatics

Prof. Dr. Rainer Spang

Macbook

University of Regensburg
Am BioPark 9
93053 Regensburg, Germany   

Tel  +49 941 943 5054
Fax  +49 941 943 5020